Publications

2020

Crawford F, Marx F, Zelner J, Cohen T.  Transmission modeling with regression adjustment for analyzing household-based studies of infectious disease: application to tuberculosis.  Epidemiology.  2020 Mar; 31(2):238-247.  Epub ahead of print. PMID:31764276

da Silva Santos A, Oliveira RD, Lemos EF, Lima F, Cohen T, Cords O, Martinez L, Gonçalves C, Ko A, Andrews JR, and Croda J. Yield, Efficiency and Costs of Mass Screening Algorithms for Tuberculosis in Brazilian Prisons. Clinical Infectious Diseases. 17 Feb 2020. pii: ciaa135. doi: 10.1093/cid/ciaa135. [Epub ahead of print]. PMID:32064514

Gunasekera K, Cohen T, Gao W, Alles H, Godfrey-Fausett P, Classens M.  Smoking and HIV associated with subclinical tuberculosis: analysis of a population-base prevalence survey.  International Journal of Tuberculosis and Lung Disease. 2020 Mar 1;24(3):340-346. doi: 10.5588/ijtld.19.0387. PMID:32228765

Martinez L, et al. (on behalf of the Pediatric TB Contact Consortium). The risk of tuberculosis in children after close exposure: an individual-participant systematic review and meta-analysis. The Lancet. 2020 March 21-27; 395(10228):973-84. https://doi.org/10.1016/S0140-6736(20)30166-5.

Menzies NA, Parriott A, Shrestha S , Dowdy DW, Cohen T, Salomon JA, Marks SM, Hill AN, Winston CA, Barry P, Readhead A, Flood J, Kahn JG, Shete PB. Comparative modelling of tuberculosis epidemiology and policy outcomes in California. American Journal of Respiratory and Critical Care Medicine. 2020 Feb 1; 201(3):356-365. PMID:31626560

Quaife M, Houben RMGJ, Allwood B, Cohen T, Coussens AK, Harries AD, van Kampen S, Marx FM, Sweeney S, Wallis RS, Menzies NA. Post-tuberculosis mortality and morbidity: valuing the hidden epidemic. Lancet Respiratory Medicine. 2020 Feb 10. pii: S2213-2600(20)30039-4. doi: 10.1016/S2213-2600(20)30039-4. [Epub ahead of print]

Yaesoubi R, Cohen T, Hsu K, Gift TL, Chesson H, Salomon JA, Grad YH. Adapative Guidelines for the treatment of gonorrhea to increase the effective life span of antibiotics among men who have sex with men in the United States: A mathematical modeling study. PLos Med. 2020 Apr 3;17(4): doi: 10.1371/journal.pmed.1003077. eCollection 2020 Apr.

2019​

Arifin SM, Zimmer C, Trotter C, Colombini A, Sidikou F, LaForce FM, Cohen T, Yaesoubi R. Cost-effectiveness of the alternative uses of polyvalent meningococcal vaccine in Niger: an agent-based transmission modeling study. Medical Decision Making. 2019 Jul;39(5):553-567. Epub 2019 Jul 3. PMID:31268405

Becerra MC, Huang C, Lecca L, Bayona J, Contreras C, Calderon R, Yataco R, Galea J, Zhang Z, Atworrd S, Cohen T, Mitnick CD, Farmer P, Murray M.  Resistance at No Cost: The Transmissibility and Potential for Disease Progression of Drug-Resistant Tuberculosis. BMJ. 2019 Nov 23.  EPub ahead of print.

Cudahy PGT, Andrews JR, Bilinski A, Dowdy DW, Mathema B, Menzies NA, Salomon JA, Shrestha S, Cohen T: Spatially targeted screening to reduce tuberculosis transmission in high-incidence settings. Lancet Infect Dis. 2019 Mar; 2018 Dec 13. PMID: 30554997

Kunkel A, Furin J, Cohen T. Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified?. Lancet Infect Dis. 2017 Dec;17(12):e429-e433. doi: 10.1016/S1473-3099(17)30299-2. Epub 2017 May 19. PMID: 28533094.

Mabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR: Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil. PLoS Med. 2019 Mar; 2019 Mar 1. PMID: 30822314

MacPherson P, Khundi M, Nliwasa M, Choko AT, Phiri VK, Webb EL, Dodd PJ, Cohen T, Harris R, Corbett EL: Disparities in access to diagnosis and care in Blantyre, Malawi, identified through enhanced tuberculosis surveillance and spatial analysis. BMC Med. 2019 Jan 29; 2019 Jan 29. PMID: 30691470

Marx FM, Cohen T, Lombard C, Hesseling AC, Dlamini SS, Beyers N, Naidoo. Notification of relapse and other previously treated tuberculosis in the 52 health districts of South Africa. The International Journal of Tuberculosis and Lung Disease. 2019 Aug 1;23(8):891-899. PMID:31533878

Morozova O, Crawford FW, Cohen T, Paltiel AD, Altice FL. Cost-effectiveness of expanding the capacity of opioid agonist treatment in Ukraine: Dynamic modeling analysis. 2020 Mar; 115(3):437-450.  Epub 2019 Oct 29. PMID:31478285

Stimson J, Gardy J, Mathema B, Crudu V, Cohen T, Colijn C: Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions. Mol Biol Evol. 2019 Mar 1. PMID: 30690464

2018

Auld SC, Shah NS, Cohen T, Martinson NA, Gandhi NR: Where is tuberculosis transmission happening? Insights from the literature, new tools to study transmission and implications for the elimination of tuberculosis. Respirology. 2018 Jun 5; 2018 Jun 5. PMID: 29869818

Cudahy PGT, Warren JL, Cohen T, Wilson D: Trends in C-Reactive Protein, D-Dimer, and Fibrinogen during Therapy for HIV-Associated Multidrug-Resistant Tuberculosis. Am J Trop Med Hyg. 2018 Nov. PMID: 30226135

Jackson C, Cohen T, Rangaka MX, Abubakar I: Eliminating tuberculosis in low-burden countries. Int J Tuberc Lung Dis. 2018 Jan 1. PMID: 29297418

Marx FM, Yaesoubi R, Menzies NA, Salomon JA, Bilinski A, Beyers N, Cohen T: Tuberculosis control interventions targeted to previously treated people in a high-incidence setting: a modelling study. Lancet Glob Health. 2018 Apr; 2018 Feb 19. PMID: 29472018

Menzies NA, Cohen T, Salomon JA: Evidence sources on the natural history of latent tuberculosis infection. Lancet Infect Dis. 2018 Aug. PMID: 30064672

Menzies NA, Cohen T, Hill AN, Yaesoubi R, Galer K, Wolf E, Marks SM, Salomon JA: Prospects for Tuberculosis Elimination in the United States: Results of a Transmission Dynamic Model. Am J Epidemiol. 2018 Sep 1. PMID: 29762657

Menzies NA, Hill AN, Cohen T, Salomon JA: The impact of migration on tuberculosis in the United States. Int J Tuberc Lung Dis. 2018 Dec 1. PMID: 30606311

Menzies NA, Wolf E, Connors D, Bellerose M, Sbarra AN, Cohen T, Hill AN, Yaesoubi R, Galer K, White PJ, Abubakar I, Salomon JA: Progression from latent infection to active disease in dynamic tuberculosis transmission models: a systematic review of the validity of modelling assumptions. Lancet Infect Dis. 2018 Aug; 2018 Apr 10. PMID: 29653698

Morozova O, Cohen T, Crawford FW. Risk ratios for contagious outcomes. J R Soc Interface. 2018 Jan;15(138). doi: 10.1098/rsif.2017.0696. Epub 2018 Jan 17.  PMID: 29343627

Thain N, Le C, Crossa A, Ahuja SD, Meissner JS, Mathema B, Kreiswirth B, Kurepina N, Cohen T, Chindelevitch L: Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR data. Infect Genet Evol. 2018 Jun 28; 2018 Jun 28. PMID: 29960078

Wallis RS, Cohen T, Menzies NA, Churchyard G: Pan-tuberculosis regimens: an argument for. Lancet Respir Med. 2018 Apr. PMID: 29595501

Warren JL, Grandjean L, Moore DAJ, Lithgow A, Coronel J, Sheen P, Zelner JL, Andrews JR, Cohen T: Investigating spillover of multidrug-resistant tuberculosis from a prison: a spatial and molecular epidemiological analysis. BMC Med. 2018 Aug 3; 2018 Aug 3. PMID: 30071850

Wilson D, Moosa MS, Cohen T, Cudahy P, Aldous C, Maartens G: Evaluation of Tuberculosis Treatment Response With Serial C-Reactive Protein Measurements. Open Forum Infect Dis. 2018 Nov; 2018 Oct 10. PMID: 30474046

Yaesoubi R, Trotter C, Colijn C, Yaesoubi M, Colombini A, Resch S, Kristiansen PA, LaForce FM, Cohen T. The cost-effectiveness of alternative vaccination strategies for polyvalent meningococcal vaccines in Burkina Faso: A transmission dynamic modeling study. PLoS Med. 2018 Jan;15(1):e1002495. doi: 10.1371/journal.pmed.1002495. eCollection 2018 Jan. PubMed PMID: 29364884; PubMed Central PMCID: PMC5783340.

Yang C, Lu L, Warren JL, Wu J, Jiang Q, Zuo T, Gan M, Liu M, Liu Q, DeRiemer K, Hong J, Shen X, Colijn C, Guo X, Gao Q, Cohen T: Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysis. Lancet Infect Dis. 2018 Jul; 2018 Apr 23. PMID: 29681517

Zelner J, Murray M, Becerra M, Galea J, Lecca L, Calderon R, Yataco R, Zhang Z, Cohen T: Protective effects of household-based TB interventions are robust to neighbourhood-level variation in exposure risk in Lima, Peru: a model-based analysis. Int J Epidemiol. 2018 Feb 1. PMID: 29025111

Zimmer C, Leuba SI, Cohen T, Yaesoubi R. Accurate quantification of uncertainty in epidemic parameter estimates and predictions using stochastic compartmental models. Stat Methods Med Res. 2019 Dec;28(12):3591-3608. doi: 10.1177/0962280218805780. Epub 2018 Nov 14. PMID: 30428780

Zimmer C, Leuba SI, Yaesoubi R, Cohen T. Use of daily Internet search query data improves real-time projections of influenza epidemics. J R Soc Interface. 2018 Oct 10;15(147). doi: 10.1098/rsif.2018.0220. PMID: 30305417

2017

Abel zur Wiesch P, Clarelli F, Cohen T. Using chemical kinetics to predict optimal antibiotic treatment strategies. PLoS Computational Biology. PLoS Comput Biol.2017 Jan 6;13(1):e1005321. doi: 10.1371/journal.pcbi.1005321. eCollection 2017 Jan. PMCID:PMC5257006

Fofana MO, Shrestha S, Knight GM, Cohen T, White RG, Cobelens F, Dowdy DW: A Multistrain Mathematical Model To Investigate the Role of Pyrazinamide in the Emergence of Extensively Drug-Resistant Tuberculosis. Antimicrob Agents Chemother. 2017 Mar; 2017 Feb 23. PMID: 27956422

Kendall EA, Cohen T, Mitnick CD, Dowdy DW: Second line drug susceptibility testing to inform the treatment of rifampin-resistant tuberculosis: a quantitative perspective. Int J Infect Dis. 2017 Mar; 2016 Dec 19. PMID: 28007660

Kendall EA, Shrestha S, Cohen T, Nuermberger E, Dooley KE, Gonzalez-Angulo L, Churchyard GJ, Nahid P, Rich ML, Bansbach C, Forissier T, Lienhardt C, Dowdy DW: Priority-Setting for Novel Drug Regimens to Treat Tuberculosis: An Epidemiologic Model. PLoS Med. 2017 Jan; 2017 Jan 3. PMID: 28045934

Kunkel A, Furin J, Cohen T: Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified? Lancet Infect Dis. 2017 Dec; 2017 May 19. PMID: 28533094

Kunkel A, Lewnard JA, Pitzer VE, Cohen T. Antimicrobial Resistance Risks of Cholera Prophylaxis for United Nations Peacekeepers. Antimicrob Agents Chemother. 2017 Aug;61(8). doi: 10.1128/AAC.00026-17. Print 2017 Aug. PMID: 28533237.

Manson AL, Cohen T, Abeel T, Desjardins CA, Armstrong DT, Barry CE 3rd, Brand J, TB Resist Global Genome Consortium., Chapman SB, Cho SN, Gabrielian A, Gomez J, Jodals AM, Joloba M, Jureen P, Lee JS, Malinga L, Maiga M, Nordenberg D, Noroc E, Romancenco E, Salazar A, Ssengooba W, Velayati AA, Winglee K, Zalutskaya A, Via LE, Cassell GH, Dorman SE, Ellner J, Farnia P, Galagan JE, Rosenthal A, Crudu V, Homorodean D, Hsueh PR, Narayanan S, Pym AS, Skrahina A, Swaminathan S, Van der Walt M, Alland D, Bishai WR, Cohen T, Hoffner S, Birren BW, Earl AM: Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance. Nat Genet. 2017 Mar; 2017 Jan 16. PMID: 28092681

Mathema B, Andrews JR, Cohen T, Borgdorff MW, Behr M, Glynn JR, Rustomjee R, Silk BJ, Wood R: Drivers of Tuberculosis Transmission. J Infect Dis. 2017 Nov 3. PMID: 29112745

Nathavitharana RR, Shi CX, Chindelevitch L, Calderon R, Zhang Z, Galea JT, Contreras C, Yataco R, Lecca L, Becerra MC, Murray MB, Cohen T: Polyclonal Pulmonary Tuberculosis Infections and Risk for Multidrug Resistance, Lima, Peru. Emerg Infect Dis. 2017 Nov. PMID: 29048297

Verguet S, Riumallo-Herl C, Gomez GB, Menzies NA, Houben RMGJ, Sumner T, Lalli M, White RG, Salomon JA, Cohen T, Foster N, Chatterjee S, Sweeney S, Baena IG, Lönnroth K, Weil DE, Vassall A: Catastrophic costs potentially averted by tuberculosis control in India and South Africa: a modelling study. Lancet Glob Health. 2017 Nov. PMID: 29025634

Zimmer C, Yaesoubi R, Cohen T. A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models. PLoS Comput Biol. 2017 Jan;13(1):e1005257. doi: 10.1371/journal.pcbi.1005257. eCollection 2017 Jan.  PMID: 28095403

2016

Andre E, Isaacs C, Affolabi D, Alagna R, Brockmann D, de Jong BC, Cambau E, Churchyard G, Cohen T, Delmee M, Delvenne JC, Farhat M, Habib A, Holme P, Keshavjee S, Khan A, Lightfoot P, Moore D, Moreno Y, Mundade Y, Pai M, Patel S, Nyaruhirira AU, Rocha LE, Takle J, Trébucq A, Creswell J, Boehme C: Connectivity of diagnostic technologies: improving surveillance and accelerating tuberculosis elimination. Int J Tuberc Lung Dis. 2016 Aug. PMID: 27393530

Chindelevitch L, Colijn C, Moodley P, Wilson D, Cohen T: ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections. PLoS Comput Biol. 2016 Feb; 2016 Feb 1. PMID: 26829497

Cohen T, Chindelevitch L, Misra R, Kempner ME, Galea J, Moodley P, Wilson D: Within-Host Heterogeneity of Mycobacterium tuberculosis Infection Is Associated With Poor Early Treatment Response: A Prospective Cohort Study. J Infect Dis. 2016 Jun 1; 2016 Jan 14. PMID: 26768249

Colijn C, Cohen T: Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics and beyond. Lancet Respir Med. 2016 Jan; 2015 Dec 4. PMID: 26669892

Colman RE, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM: Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study. J Clin Microbiol. 2016 Aug; 2016 May 25. PMID: 27225403

Heidebrecht CL, Podewils LJ, Pym A, Mthiyane T, Cohen T: Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling. PLoS One. 2016; 2016 Apr 6. PMID: 27050561

Heidebrecht CL, Podewils LJ, Pym AS, Cohen T, Mthiyane T, Wilson D: Assessing the utility of Xpert(®) MTB/RIF as a screening tool for patients admitted to medical wards in South Africa. Sci Rep. 2016 Jan 20; 2016 Jan 20. PMID: 26786396

Houben RMGJ, Menzies NA, Sumner T, Huynh GH, Arinaminpathy N, Goldhaber-Fiebert JD, Lin HH, Wu CY, Mandal S, Pandey S, Suen SC, Bendavid E, Azman AS, Dowdy DW, Bacaër N, Rhines AS, Feldman MW, Handel A, Whalen CC, Chang ST, Wagner BG, Eckhoff PA, Trauer JM, Denholm JT, McBryde ES, Cohen T, Salomon JA, Pretorius C, Lalli M, Eaton JW, Boccia D, Hosseini M, Gomez GB, Sahu S, Daniels C, Ditiu L, Chin DP, Wang L, Chadha VK, Rade K, Dewan P, Hippner P, Charalambous S, Grant AD, Churchyard G, Pillay Y, Mametja LD, Kimerling ME, Vassall A, White RG: Feasibility of achieving the 2025 WHO global tuberculosis targets in South Africa, China, and India: a combined analysis of 11 mathematical models. Lancet Glob Health. 2016 Nov; 2016 Oct 6. PMID: 27720688

Jezmir J, Cohen T, Zignol M, Nyakan E, Hedt-Gauthier BL, Gardner A, Kamle L, Injera W, Carter EJ: Use of Lot Quality Assurance Sampling to Ascertain Levels of Drug Resistant Tuberculosis in Western Kenya. PLoS One. 2016; 2016 May 11. PMID: 27167381

Kendall EA, Cohen T, Mitnick CD, Dowdy DW. Second line drug susceptibility testing to inform the treatment of rifampin-resistant tuberculosis: a quantitative perspective. Int J Infect Dis. 2017 Mar;56:185-189. doi: 10.1016/j.ijid.2016.12.010. Epub 2016 Dec 19. PubMed PMID: 28007660

Kunkel A, Abel Zur Wiesch P, Nathavitharana RR, Marx FM, Jenkins HE, Cohen T: Smear positivity in paediatric and adult tuberculosis: systematic review and meta-analysis. BMC Infect Dis. 2016 Jun 13; 2016 Jun 13. PMID: 27296716

Kunkel A, Cobelens FG, Cohen T: Tradeoffs in Introduction Policies for the Anti-Tuberculosis Drug Bedaquiline: A Model-Based Analysis. PLoS Med. 2016 Oct; 2016 Oct 11. PMID: 27727274

Kunkel A, Crawford FW, Shepherd J, Cohen T: Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining tuberculosis/HIV coepidemic. AIDS. 2016 Nov 13. PMID: 27782966

Lieberman TD, Wilson D, Misra R, Xiong LL, Moodley P, Cohen T, Kishony R: Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosis.Nat Med. 2016 Dec; 2016 Oct 31. PMID: 27798613

Mears J, Vynnycky E, Lord J, Borgdorff MW, Cohen T, Crisp D, Innes JA, Lilley M, Maguire H, McHugh TD, Woltmann G, Abubakar I, Sonnenberg P: The prospective evaluation of the TB strain typing service in England: a mixed methods study. Thorax. 2016 Aug; 2015 Apr 16. PMID: 25882538

Marx FM, Floyd S, Ayles H, Godfrey-Faussett P, Beyers N, Cohen T: High burden of prevalent tuberculosis among previously treated people in Southern Africa suggests potential for targeted control interventions. Eur Respir J. 2016 Oct; 2016 Jul 7. PMID: 27390274

Menzies NA, Gomez GB, Bozzani F, Chatterjee S, Foster N, Baena IG, Laurence YV, Qiang S, Siroka A, Sweeney S, Verguet S, Arinaminpathy N, Azman AS, Bendavid E, Chang ST, Cohen T, Denholm JT, Dowdy DW, Eckhoff PA, Goldhaber-Fiebert JD, Handel A, Huynh GH, Lalli M, Lin HH, Mandal S, McBryde ES, Pandey S, Salomon JA, Suen SC, Sumner T, Trauer JM, Wagner BG, Whalen CC, Wu CY, Boccia D, Chadha VK, Charalambous S, Chin DP, Churchyard G, Daniels C, Dewan P, Ditiu L, Eaton JW, Grant AD, Hippner P, Hosseini M, Mametja D, Pretorius C, Pillay Y, Rade K, Sahu S, Wang L, Houben RMGJ, Kimerling ME, White RG, Vassall A: Cost-effectiveness and resource implications of aggressive action on tuberculosis in China, India, and South Africa: a combined analysis of nine models. Lancet Glob Health. 2016 Nov; 2016 Oct 6. PMID: 27720689

Mitnick CD, White RA, Lu C, Rodriguez CA, Bayona J, Becerra MC, Burgos M, Centis R, Cohen T, Cox H, D’Ambrosio L, Danilovitz M, Falzon D, Gelmanova IY, Gler MT, Grinsdale JA, Holtz TH, Keshavjee S, Leimane V, Menzies D, Migliori GB, Milstein MB, Mishustin SP, Pagano M, Quelapio MI, Shean K, Shin SS, Tolman AW, van der Walt ML, Van Deun A, Viiklepp P, Collaborative Group for Analysis of Bacteriology Data in MDR-TB Treatment.: Multidrug-resistant tuberculosis treatment failure detection depends on monitoring interval and microbiological method. Eur Respir J. 2016 Oct; 2016 Sep 1. PMID: 27587552

Salvatore PP, Becerra MC, Abel zur Wiesch P, Hinkley T, Kaur D, Sloutsky A, Cohen T: Fitness Costs of Drug Resistance Mutations in Multidrug-Resistant Mycobacterium tuberculosis: A Household-Based Case-Control Study. J Infect Dis. 2016 Jan 1; 2015 Jun 19. PMID: 26092854

Van Rie A, Cohen T: The contributions of Steve Lawn to the science, advocacy and policy of HIV-associated TB. Int J Tuberc Lung Dis. 2016 Dec. PMID: 27931328

Yaesoubi R, Cohen T. Identifying cost-effective dynamic policies to control epidemics. Stat Med. 2016 Dec 10;35(28):5189-5209. doi: 10.1002/sim.7047. Epub 2016 Jul 24.  PMID: 27449759

Yates TA, Khan PY, Knight GM, Taylor JG, McHugh TD, Lipman M, White RG, Cohen T, Cobelens FG, Wood R, Moore DA, Abubakar I: The transmission of Mycobacterium tuberculosis in high burden settings. Lancet Infect Dis. 2016 Feb; 2016 Jan 26. PMID: 26867464

Zelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Manjourides J, Grenfell BT, Cohen T: Identifying Hotspots of Multidrug-Resistant Tuberculosis Transmission Using Spatial and Molecular Genetic Data. J Infect Dis. 2016 Jan 15; 2015 Jul 14. PMID: 26175455

Zhang Z, Manjourides J, Cohen T, Hu Y, Jiang Q. Spatial measurement errors in the field of spatial epidemiology. Int J Health Geogr. 2016 Jul 1;15(1):21. doi: 10.1186/s12942-016-0049-5. PMID: 27368370

2015

Abel Zur Wiesch P, Abel S, Gkotzis S, Ocampo P, Engelstädter J, Hinkley T, Magnus C, Waldor MK, Udekwu K, Cohen T: Classic reaction kinetics can explain complex patterns of antibiotic action. Sci Transl Med. 2015 May 13. PMID: 25972005

Birger R, Kouyos RD, Huijben S, Griffiths E, Mina M, Cohen T, Volkova V, Grenfell B, Metcalf CJE. The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends in Microbiology. Volume 23, Issue 9, September 2015, Pages 537-544. PMID:26028590

Chang, HH, Cohen T, Grad YH, Hanage WP, O’Brien TF, Lipsitch M. Origin and proliferation of multiple-drug resistance in bacterial pathogens. Microbiol Mol Biol Rev. 2015 Mar;79(1):101-116. PMID: 25652543

Chindelevitch L, Menzies NA, Pretorius C, Stover J, Salomon JA, Cohen T: Evaluating the potential impact of enhancing HIV treatment and tuberculosis control programmes on the burden of tuberculosis. J R Soc Interface. 2015 May 6. PMID: 25878131

Colijn C, Cohen T. How competition governs whether moderate or aggressive treatment minimizes antibiotic resistance. Elife.2015 Sep 22;4. doi: 10.7554/eLife.10559. PubMed PMID: 26393685

Jia Z, Huang X, Wu H, Zhang T, Li N, Ding P, Sun Y, Liu Z, Wei F, Zhang H, Jiao Y, Ji Y, Zhang Y, Guo C, Li W, Mou D, Xia W, Li Z, Chen D, Yan H, Chen X, Zhao J, Meyers K, Cohen T, Mayer K, Salomon JA, Lu Z, Dye C: HIV burden in men who have sex with men: a prospective cohort study 2007-2012. Sci Rep. 2015 Jul 2; 2015 Jul 2. PMID: 26135810

Knight GM, Colijn C, Shrestha S, Fofana M, Cobelens F, White RG, Dowdy DW, Cohen T: The Distribution of Fitness Costs of Resistance-Conferring Mutations Is a Key Determinant for the Future Burden of Drug-Resistant Tuberculosis: A Model-Based Analysis. Clin Infect Dis. 2015 Oct 15. PMID: 26409276

Kunkel A, Colijn C, Lipsitch M, Cohen T: How could preventive therapy affect the prevalence of drug resistance? Causes and consequences. Philos Trans R Soc Lond B Biol Sci. 2015 Jun 5. PMID: 25918446

Mears J, Abubakar I, Cohen T, McHugh TD, Sonnenberg P: Effect of study design and setting on tuberculosis clustering estimates using Mycobacterial Interspersed Repetitive Units-Variable Number Tandem Repeats (MIRU-VNTR): a systematic review. BMJ Open. 2015 Jan 21; 2015 Jan 21. PMID: 25609667

Mears J, Vynnycky E, Lord J, Borgdorff MW, Cohen T, Crisp D, Innes JA, Lilley M, Maguire H, McHugh TD, Woltmann G, Abubakar I, Sonnenberg P. The Prospective Evaluation of the Tuberculosis Strain-Typing Service in England: A Mixed Methods Study. 2016 Aug;71(8):734-41. PMID:25882538

Menzies NA, Cohen T, Murray M, Salomon JA: Effect of empirical treatment on outcomes of clinical trials of diagnostic assays for tuberculosis. Lancet Infect Dis. 2015 Jan. PMID: 25541164

Plazzotta G, Cohen T, Colijn C: Magnitude and sources of bias in the detection of mixed strain M. tuberculosis infection. J Theor Biol. 2015 Mar 7; 2014 Dec 29. PMID: 25553967

Seddon JA, Jenkins HE, Liu L, Cohen T, Black RE, Vos T, Becerra MC, Graham SM, Sismanidis C, Dodd PJ: Counting children with tuberculosis: why numbers matter. Int J Tuberc Lung Dis. 2015 Dec. PMID: 26564535

Theron G, Jenkins HE, Cobelens F, Abubakar I, Khan AJ, Cohen T, Dowdy DW: Data for action: collection and use of local data to end tuberculosis. Lancet. 2015 Dec 5; 2015 Oct 26. PMID: 26515676

2014

Bantubani N, Kabera G, Connolly C, Rustomjee R, Reddy T, Cohen T, Pym AS: High rates of potentially infectious tuberculosis and multidrug-resistant tuberculosis (MDR-TB) among hospital inpatients in KwaZulu Natal, South Africa indicate risk of nosocomial transmission. PLoS One. 2014; 2014 Mar 13. PMID: 24625669

Cohen T, Jenkins HE, Lu C, McLaughlin M, Floyd K, Zignol M: On the spread and control of MDR-TB epidemics: an examination of trends in anti-tuberculosis drug resistance surveillance data. Drug Resist Updat. 2014 Oct-Dec; 2014 Oct 6. PMID: 25458783

Dowdy DW, Houben R, Cohen T, Pai M, Cobelens F, Vassall A, Menzies NA, Gomez GB, Langley I, Squire SB, White R, TB MAC meeting participants.  Impact and cost-effectiveness of current and future tuberculosis diagnostics: the contribution of modelling. Int J Tuberc Lung Dis. 2014 Sep. PMID: 25189546

Eaton JW, Menzies NA, Stover J, Cambiano V, Chindelevitch L, Cori A, Hontelez JA, Humair S, Kerr CC, Klein DJ, Mishra S, Mitchell KM, Nichols BE, Vickerman P, Bakker R, Bärnighausen T, Bershteyn A, Bloom DE, Boily MC, Chang ST, Cohen T, Dodd PJ, Fraser C, Gopalappa C, Lundgren J, Martin NK, Mikkelsen E, Mountain E, Pham QD, Pickles M, Phillips A, Platt L, Pretorius C, Prudden HJ, Salomon JA, van de Vijver DA, de Vlas SJ, Wagner BG, White RG, Wilson DP, Zhang L, Blandford J, Meyer-Rath G, Remme M, Revill P, Sangrujee N, Terris-Prestholt F, Doherty M, Shaffer N, Easterbrook PJ, Hirnschall G, Hallett. TB: Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models. Lancet Glob Health. 2014 Jan; 2013 Dec 10. PMID: 25104632

Field N, Cohen T, Struelens MJ, Palm D, Cookson B, Glynn JR, Gallo V, Ramsay M, Sonnenberg P, Maccannell D, Charlett A, Egger M, Green J, Vineis P, Abubakar I: Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement. Lancet Infect Dis. 2014 Apr; 2014 Mar 14. PMID: 24631223

Huang CC, Tchetgen ET, Becerra MC, Cohen T, Galea J, Calderon R, Yataco R, Contreras C, Zhang ZB, Lecca L, Murray M: Cigarette smoking among tuberculosis patients increases risk of transmission to child contacts. Int J Tuberc Lung Dis. 2014 Nov. PMID: 25299859

Huang CC, Tchetgen ET, Becerra MC, Cohen T, Hughes KC, Zhang Z, Calderon R, Yataco R, Contreras C, Galea J, Lecca L, Murray M: The effect of HIV-related immunosuppression on the risk of tuberculosis transmission to household contacts. Clin Infect Dis. 2014 Mar; 2013 Dec 23. PMID: 24368620

Houben RM, Dowdy DW, Vassall A, Cohen T, Nicol MP, Granich RM, Shea JE, Eckhoff P, Dye C, Kimerling ME, White RG, TB MAC TB-HIV meeting participants.  How can mathematical models advance tuberculosis control in high HIV prevalence settings? Int J Tuberc Lung Dis. 2014 May. PMID: 24903784

Hu Y, Xiong C, Zhang Z, Luo C, Cohen T, Gao J, Zhang L, Jiang Q: Changing patterns of spatial clustering of schistosomiasis in Southwest China between 1999-2001 and 2007-2008: assessing progress toward eradication after the World Bank Loan Project. Int J Environ Res Public Health. 2014 Jan 3; 2014 Jan 3. PMID: 24394217Jenkins HE, Crudu V, Soltan V, Ciobanu A, Domente L, Cohen T: High risk and rapid appearance of multidrug resistance during tuberculosis treatment in Moldova. Eur Respir J. 2014 Apr; 2014 Feb 20. PMID: 24558181

Jenkins HE, Crudu V, Soltan V, Ciobanu A, Domente L, Cohen T: High risk and rapid appearance of multidrug resistance during tuberculosis treatment in Moldova. Eur Respir J. 2014 Apr; 2014 Feb 20. PMID: 24558181

Jenkins HE, Gegia M, Furin J, Kalandadze I, Nanava U, Chakhaia T, Cohen T: Geographical heterogeneity of multidrug-resistant tuberculosis in Georgia, January 2009 to June 2011. Euro Surveill. 2014 Mar 20; 2014 Mar 20. PMID: 24679722

Jenkins HE, Pagano M, Yuen CM, Becerra MC, Cohen T: The burden of tuberculosis disease in children–Authors’ reply. Lancet. 2014 Oct 11. PMID: 25307837

Jenkins HE, Tolman AW, Yuen CM, Parr JB, Keshavjee S, Pérez-Vélez CM, Pagano M, Becerra MC, Cohen T: Incidence of multidrug-resistant tuberculosis disease in children: systematic review and global estimates. Lancet. 2014 May 3; 2014 Mar 24. PMID: 24671080

Kouyos RD, Metcalf CJ, Birger R, Klein EY, Abel zur Wiesch P, Ankomah P, Arinaminpathy N, Bogich TL, Bonhoeffer S, Brower C, Chi-Johnston G, Cohen T, Day T, Greenhouse B, Huijben S, Metlay J, Mideo N, Pollitt LC, Read AF, Smith DL, Standley C, Wale N, Grenfell B: The path of least resistance: aggressive or moderate treatment? Proc Biol Sci. 2014 Nov 7. PMID: 25253451

Langley I, Lin HH, Egwaga S, Doulla B, Ku CC, Murray M, Cohen T, Squire SB: Assessment of the patient, health system, and population effects of Xpert MTB/RIF and alternative diagnostics for tuberculosis in Tanzania: an integrated modelling approach. Lancet Glob Health. 2014 Oct. PMID: 25304634

Mears J, Abubakar I, Crisp D, Maguire H, Innes JA, Lilley M, Lord J, Cohen T, Borgdorff MW, Vynnycky E, McHugh TD, Sonnenberg P: Prospective evaluation of a complex public health intervention: lessons from an initial and follow-up cross-sectional survey of the tuberculosis strain typing service in England. BMC Public Health. 2014 Oct 2; 2014 Oct 2. PMID: 25273511

Odone A, Amadasi S, White RG, Cohen T, Grant AD, Houben RM: The impact of antiretroviral therapy on mortality in HIV positive people during tuberculosis treatment: a systematic review and meta-analysis. PLoS One. 2014; 2014 Nov 12. PMID: 25391135

Pretorius C, Menzies NA, Chindelevitch L, Cohen T, Cori A, Eaton JW, Fraser C, Gopalappa C, Hallett TB, Salomon JA, Stover J, White RG, Dodd PJ: The potential effects of changing HIV treatment policy on tuberculosis outcomes in South Africa: results from three tuberculosis-HIV transmission models. AIDS. 2014 Jan. PMID: 24468944

Stagg HR, Cohen T, Becerra MC, Anderson LF, Abubakar I: A tale of two settings: the role of the Beijing genotype in the epidemiology of multidrug-resistant tuberculosis. Eur Respir J. 2014 Feb; 2013 Sep 13. PMID: 24036242

Shrestha S, Knight GM, Fofana M, Cohen T, White RG, Cobelens F, Dowdy DW: Drivers and trajectories of resistance to new first-line drug regimens for tuberculosis. Open Forum Infect Dis. 2014 Sep; 2014 Aug 30. PMID: 25734143

Zelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Grenfell BT, Cohen T: Age-specific risks of tuberculosis infection from household and community exposures and opportunities for interventions in a high-burden setting. Am J Epidemiol. 2014 Oct 15; 2014 Sep 4. PMID: 25190676

Zelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Grenfell BT, Cohen T: Bacillus Calmette-Guérin and isoniazid preventive therapy protect contacts of patients with tuberculosis. Am J Respir Crit Care Med. 2014 Apr 1. PMID: 24592878

Zwerling A, White RG, Vassall A, Cohen T, Dowdy DW, Houben RM: Modeling of novel diagnostic strategies for active tuberculosis – a systematic review: current practices and recommendations. PLoS One. 2014; 2014 Oct 23. PMID: 25340701

2013

Anderson LF, Tamne S, Watson JP, Cohen T, Mitnick C, Brown T, Drobniewski F, Abubakar I: Treatment outcome of multi-drug resistant tuberculosis in the United Kingdom: retrospective-prospective cohort study from 2004 to 2007. Euro Surveill. 2013 Oct 3; 2013 Oct 3. PMID: 24128699

Dowdy DW, Dye C, Cohen T: Data needs for evidence-based decisions: a tuberculosis modeler’s ‘wish list’. Int J Tuberc Lung Dis. 2013 Jul. PMID: 23743307

Ford CB, Shah RR, Maeda MK, Gagneux S, Murray MB, Cohen T, Johnston JC, Gardy J, Lipsitch M, Fortune SM: Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nat Genet. 2013 Jul; 2013 Jun 9. PMID: 23749189

Izu A, Cohen T, Degruttola V: Bayesian estimation of mixture models with prespecified elements to compare drug resistance in treatment-naïve and experienced tuberculosis cases. PLoS Comput Biol. 2013; 2013 Mar 21. PMID: 23555210

Jenkins HE, Ciobanu A, Plesca V, Crudu V, Galusca I, Soltan V, Cohen T: Risk factors and timing of default from treatment for non-multidrug-resistant tuberculosis in Moldova. Int J Tuberc Lung Dis. 2013 Mar. PMID: 23407226

Jenkins HE, Plesca V, Ciobanu A, Crudu V, Galusca I, Soltan V, Serbulenco A, Zignol M, Dadu A, Dara M, Cohen T: Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden country. Eur Respir J. 2013 Nov; 2012 Oct 25. PMID: 23100496

Mills HL, Cohen T, Colijn C: Community-wide isoniazid preventive therapy drives drug-resistant tuberculosis: a model-based analysis. Sci Transl Med. 2013 Apr 10. PMID: 23576815

Mitnick CD, Keravec J, Cohen T: Planning for the invisible: projecting resources needed to identify and treat all patients with MDR-TB. Int J Tuberc Lung Dis. 2013 Apr. PMID: 23485374

Robinson K, Fyson N, Cohen T, Fraser C, Colijn C: How the dynamics and structure of sexual contact networks shape pathogen phylogenies. PLoS Comput Biol. 2013; 2013 Jun 20. PMID: 23818840

Yaesoubi R, Cohen T: Identifying dynamic tuberculosis case-finding policies for HIV/TB coepidemics. Proc Natl Acad Sci U S A. 2013 Jun 4; 2013 May 20. PMID: 23690585

Yuen CM, Tolman AW, Cohen T, Parr JB, Keshavjee S, Becerra MC: Isoniazid-resistant tuberculosis in children: a systematic review. Pediatr Infect Dis J. 2013 May. PMID: 23348808

2012

Abubakar I, Stagg HR, Cohen T, Mangtani P, Rodrigues LC, Pimpin L, Watson JM, Squire SB, Zumla A: Controversies and unresolved issues in tuberculosis prevention and control: a low-burden-country perspective. J Infect Dis. 2012 May 15; 2012 Mar 22. PMID: 22448025

Cohen T, Manjourides J, Hedt-Gauthier B: Linking surveillance with action against drug-resistant tuberculosis. Am J Respir Crit Care Med. 2012 Sep 1; 2012 May 16. PMID: 22592806

Cohen T, van Helden PD, Wilson D, Colijn C, McLaughlin MM, Abubakar I, Warren RM: Mixed-strain mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control.Clin Microbiol Rev. 2012 Oct. PMID: 23034327

Gegia M, Cohen T, Kalandadze I, Vashakidze L, Furin J: Outcomes among tuberculosis patients with isoniazid resistance in Georgia, 2007-2009. Int J Tuberc Lung Dis. 2012 Jun; 2012 Apr 9. PMID: 22507372

Hedt BL, van Leth F, Zignol M, Cobelens F, van Gemert W, Nhung NV, Lyepshina S, Egwaga S, Cohen T: Multidrug resistance among new tuberculosis cases: detecting local variation through lot quality-assurance sampling. Epidemiology. 2012 Mar. PMID: 22249242

Lin HH, Dowdy D, Dye C, Murray M, Cohen T: The impact of new tuberculosis diagnostics on transmission: why context matters. Bull World Health Organ. 2012 Oct 1; 2012 Jul 16. PMID: 23109741

Lin HH, Shin SS, Contreras C, Asencios L, Paciorek CJ, Cohen T: Use of spatial information to predict multidrug resistance in tuberculosis patients, Peru. Emerg Infect Dis. 2012 May. PMID: 22516236

Manjourides J, Lin HH, Shin S, Jeffery C, Contreras C, Cruz JS, Jave O, Yagui M, Asencios L, Pagano M, Cohen T: Identifying multidrug resistant tuberculosis transmission hotspots using routinely collected data. Tuberculosis (Edinb). 2012 May; 2012 Mar 6. PMID: 22401962

Menzies NA, Cohen T, Lin HH, Murray M, Salomon JA: Population health impact and cost-effectiveness of tuberculosis diagnosis with Xpert MTB/RIF: a dynamic simulation and economic evaluation. PLoS Med. 2012; 2012 Nov 20. PMID: 23185139

Robinson K, Cohen T, Colijn C: The dynamics of sexual contact networks: effects on disease spread and control. Theor Popul Biol. 2012 Mar; 2012 Jan 8. PMID: 22248701

Sergeev R, Colijn C, Murray M, Cohen T: Modeling the dynamic relationship between HIV and the risk of drug-resistant tuberculosis. Sci Transl Med. 2012 May 23. PMID: 22623743

 

2011

Brooks-Pollock E, Becerra MC, Goldstein E, Cohen T, Murray MB: Epidemiologic inference from the distribution of tuberculosis cases in households in Lima, Peru. J Infect Dis. 2011 Jun 1. PMID: 21592987

Cohen T, Murray M, Abubakar I, Zhang Z, Sloutsky A, Arteaga F, Chalco K, Franke MF, Becerra MC: Multiple introductions of multidrug-resistant tuberculosis into households, Lima, Peru. Emerg Infect Dis. 2011 Jun. PMID: 21749756

Cohen T, Wilson D, Wallengren K, Samuel EY, Murray M: Mixed-strain Mycobacterium tuberculosis infections among patients dying in a hospital in KwaZulu-Natal, South Africa. J Clin Microbiol. 2011 Jan; 2010 Oct 27. PMID: 20980576

Colijn C, Cohen T, Ganesh A, Murray M: Spontaneous emergence of multiple drug resistance in tuberculosis before and during therapy. PLoS One. 2011 Mar 30; 2011 Mar 30. PMID: 21479171

Gardner A, Cohen T, Carter EJ: Tuberculosis among participants in an academic global health medical exchange program. J Gen Intern Med. 2011 Aug; 2011 Feb 26. PMID: 21359579

Goldhaber-Fiebert JD, Jeon CY, Cohen T, Murray MB: Diabetes mellitus and tuberculosis in countries with high tuberculosis burdens: individual risks and social determinants. Int J Epidemiol. 2011 Apr; 2011 Jan 20. PMID: 21252210

Hedt BL, Laufer MK, Cohen T: Drug resistance surveillance in resource-poor settings: current methods and considerations for TB, HIV, and malaria. Am J Trop Med Hyg. 2011 Feb. PMID: 21292884

Izu A, Cohen T, Mitnick C, Murray M, De Gruttola V: Bayesian methods for fitting mixture models that characterize branching tree processes: An application to development of resistant TB strains. Stat Med. 2011 Sep 30; 2011 Jun 30. PMID: 21717491

Jenkins HE, Zignol M, Cohen T: Quantifying the burden and trends of isoniazid resistant tuberculosis, 1994-2009. PLoS One. 2011; 2011 Jul 29. PMID: 21829557

Lin HH, Langley I, Mwenda R, Doulla B, Egwaga S, Millington KA, Mann GH, Murray M, Squire SB, Cohen T: A modelling framework to support the selection and implementation of new tuberculosis diagnostic tools. Int J Tuberc Lung Dis. 2011 Aug. PMID: 21740663

Lin H, Shin S, Blaya JA, Zhang Z, Cegielski P, Contreras C, Asencios L, Bonilla C, Bayona J, Paciorek CJ, Cohen T: Assessing spatiotemporal patterns of multidrug-resistant and drug-sensitive tuberculosis in a South American setting. Epidemiol Infect. 2011 Nov; 2010 Dec 23. PMID: 21205434

Mills HL, Cohen T, Colijn C: Modelling the performance of isoniazid preventive therapy for reducing tuberculosis in HIV endemic settings: the effects of network structure. J R Soc Interface. 2011 Oct 7; 2011 Apr 20. PMID: 21508012Sergeev R, Colijn C, Cohen T: Models to understand the population-level impact of mixed strain M. tuberculosis infections. J Theor Biol. 2011 Jul 7; 2011 Apr 16. PMID: 21514304

Yaesoubi R, Cohen T: Dynamic health policies for controlling the spread of emerging infections: influenza as an example. PLoS One. 2011; 2011 Sep 6. PMID: 21915279

Yaesoubi R, Cohen T: Generalized Markov Models of Infectious Disease Spread: A Novel Framework for Developing Dynamic Health Policies. Eur J Oper Res. 2011 Dec 16. PMID: 21966083

2010

Boulle A, Clayden P, Cohen K, Cohen T, Conradie F, Dong K, Geffen N, Grimwood A, Hurtado R, Kenyon C, Lawn S, Maartens G, Meintjes G, Mendelson M, Murray M, Rangaka M, Sanne I, Spencer D, Taljaard J, Variava E, Venter WD, Wilson D: Prolonged deferral of antiretroviral therapy in the SAPIT trial: did we need a clinical trial to tell us that this would increase mortality? S Afr Med J. 2010 Sep 7; 2010 Sep 7. PMID: 20822639

Brooks-Pollock E, Cohen T, Murray M: The impact of realistic age structure in simple models of tuberculosis transmission. PLoS One. 2010 Jan 7; 2010 Jan 7. PMID: 20062531Cohen T, Hedt BL, Pagano M: Estimating the magnitude and direction of bias in tuberculosis drug resistance surveys conducted only in the public sector: a simulation study.  BMC Public Health. 2010 Jun 21; 2010 Jun 21. PMID: 20565947

Cohen T, Hedt BL, Pagano M. Estimating the magnitude and direction of bias in tuberculosis drug resistance surveys conducted only in the public sector: a simulation study. BMC Public Health. 2010 Jun 21;10:355. doi: 10.1186/1471-2458-10-355. PubMed PMID: 20565947; PubMed Central PMCID: PMC2898828.

Cohen T, Murray M, Wallengren K, Alvarez GG, Samuel EY, Wilson D: The prevalence and drug sensitivity of tuberculosis among patients dying in hospital in KwaZulu-Natal, South Africa: a postmortem study. PLoS Med. 2010 Jun 22; 2010 Jun 22. PMID: 20582324

Colijn C, Cohen T, Fraser C, Hanage W, Goldstein E, Givon-Lavi N, Dagan R, Lipsitch M: What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae? J R Soc Interface. 2010 Jun 6; 2009 Nov 25. PMID: 19940002

Lipsitch M, Tchetgen Tchetgen E, Cohen T: Negative controls: a tool for detecting confounding and bias in observational studies. Epidemiology. 2010 May. PMID: 20335814

Shin SS, Keshavjee S, Gelmanova IY, Atwood S, Franke MF, Mishustin SP, Strelis AK, Andreev YG, Pasechnikov AD, Barnashov A, Tonkel TP, Cohen T: Development of extensively drug-resistant tuberculosis during multidrug-resistant tuberculosis treatment. Am J Respir Crit Care Med. 2010 Aug 1; 2010 Apr 22. PMID: 20413630

2009

Blaya JA, Cohen T, Rodríguez P, Kim J, Fraser HS: Personal digital assistants to collect tuberculosis bacteriology data in Peru reduce delays, errors, and workload, and are acceptable to users: cluster randomized controlled trial. Int J Infect Dis. 2009 May; 2008 Dec 18. PMID: 19097925

Cohen T, Dye C, Colijn C, Williams B, Murray M: Mathematical models of the epidemiology and control of drug-resistant TB. Expert Rev Respir Med. 2009 Feb. PMID: 20477283

Colijn C, Cohen T, Murray M: Latent coinfection and the maintenance of strain diversity. Bull Math Biol. 2009 Jan; 2008 Dec 10. PMID: 19082663

Lipsitch M, Colijn C, Cohen T, Hanage WP, Fraser C: No coexistence for free: neutral null models for multistrain pathogens. Epidemics. 2009 Mar; 2008 Nov 4. PMID: 21352747

Lipsitch M, Lajous M, O’Hagan JJ, Cohen T, Miller JC, Goldstein E, Danon L, Wallinga J, Riley S, Dowell SF, Reed C, McCarron M: Use of cumulative incidence of novel influenza A/H1N1 in foreign travelers to estimate lower bounds on cumulative incidence in Mexico. PLoS One. 2009 Sep 9; 2009 Sep 9. PMID: 19742302

 

2008

Cohen T, Colijn C, Finklea B, Wright A, Zignol M, Pym A, Murray M: Are survey-based estimates of the burden of drug resistant TB too low? Insight from a simulation study. PLoS One. 2008 Jun 4; 2008 Jun 4. PMID: 18523659

Cohen T, Colijn C, Murray M: Modeling the effects of strain diversity and mechanisms of strain competition on the potential performance of new tuberculosis vaccines. Proc Natl Acad Sci U S A. 2008 Oct 21; 2008 Oct 10. PMID: 18849476

Cohen T, Colijn C, Wright A, Zignol M, Pym A, Murray M: Challenges in estimating the total burden of drug-resistant tuberculosis. Am J Respir Crit Care Med. 2008 Jun 15; 2008 Mar 27. PMID: 18369201

Dagan R, Barkai G, Givon-Lavi N, Sharf AZ, Vardy D, Cohen T, Lipsitch M, Greenberg D: Seasonality of antibiotic-resistant streptococcus pneumoniae that causes acute otitis media: a clue for an antibiotic-restriction policy? J Infect Dis. 2008 Apr 15. PMID: 18419528

Lin HH, Murray M, Cohen T, Colijn C, Ezzati M: Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling study. Lancet. 2008 Oct 25; 2008 Oct 3. PMID: 18835640

 

 

2007

Cohen T, Colijn C, Finklea B, Murray M: Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission. J R Soc Interface. 2007 Jun 22. PMID: 17251134

Colijn C, Cohen T, Murray M: Emergent heterogeneity in declining tuberculosis epidemics. J Theor Biol. 2007 Aug 21; 2007 Apr 27. PMID: 17540410

Lipsitch M, Cohen T, Murray M, Levin BR: Antiviral resistance and the control of pandemic influenza. PLoS Med. 2007 Jan. PMID: 17253900

2006

Cohen T, Lipsitch M, Walensky RP, Murray M: Beneficial and perverse effects of isoniazid preventive therapy for latent tuberculosis infection in HIV-tuberculosis coinfected populations. Proc Natl Acad Sci U S A. 2006 May 2; 2006 Apr 21. PMID: 16632605

2005

Cohen T, Murray M: Incident tuberculosis among recent US immigrants and exogenous reinfection. Emerg Infect Dis. 2005 May. PMID: 15890129

2004

Cohen T, Becerra MC, Murray MB: Isoniazid resistance and the future of drug-resistant tuberculosis. Microb Drug Resist. 2004 Winter. PMID: 15650371

Cohen T, Murray M: Modeling epidemics of multidrug-resistant M. tuberculosis of heterogeneous fitness. Nat Med. 2004 Oct; 2004 Sep 19. PMID: 15378056

2003

Cohen T, Sommers B, Murray M: The effect of drug resistance on the fitness of Mycobacterium tuberculosis. Lancet Infect Dis. 2003 Jan. PMID: 12505028

Lipsitch M, Cohen T, Cooper B, Robins JM, Ma S, James L, Gopalakrishna G, Chew SK, Tan CC, Samore MH, Fisman D, Murray M: Transmission dynamics and control of severe acute respiratory syndrome.Science. 2003 Jun 20; 2003 May 23. PMID: 12766207